rs259445581 SNP Detail

Summary

• ID
  rs259445581
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80864678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGCGTG GCTTCTCCAG
  CGCCTTTTGC CTCAGCTTTT ATCAAAAGTT TCCAGGGCGA AGGTTTTCTG AAGGAAAGAT
  AAAAGTTCAC AGAGGCACCC GCAGCAGCTT CCCACTTACA TTTGGGATTT TGGAGTGACA
  TCTCAGGCGT TGTAAAACAA ACTGGTATGC TGGGCTGCAG TGTTTGAACA TAGACTCCTC
  K
  TTACTAGGAA GTTTTAAGTA TTTTGCAATT TTTAAAAATT GCTTACTGGG TACTGCACAC
  CCTCCCAGAT TTGAACGATG TAGTTGACTT ACTTAACTGT CTTAACTTTC TAGCAGTCAT
  AGAAATAATC CTTTTTTGTT GGAAAGAGAC GATGTTGTTC AGCTTTGCAC ACTGGAGTGC
  TTACCCTGCC CTACCAATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372063470	MGP_WTSI_7_88359816	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259445581					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372063470	MGP_WTSI_7_88359816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80864678 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	1757 bp upstream
Cpgi19350	CpG island 19350	457 bp distal
Gm73624	predicted gene, 73624	1549 bp upstream
Pde8a	phosphodiesterase 8A	within coordinates
Tssr67494	transcription start site region 67494	1646 bp downstream
Tssr67495	transcription start site region 67495	1608 bp downstream
Tssr67496	transcription start site region 67496	1588 bp downstream
Tssr67497	transcription start site region 67497	1571 bp downstream
Tssr67498	transcription start site region 67498	1434 bp downstream
Tssr67499	transcription start site region 67499	1298 bp downstream
Tssr67500	transcription start site region 67500	1167 bp downstream
Tssr67501	transcription start site region 67501	1054 bp downstream
Tssr67502	transcription start site region 67502	864 bp downstream
Tssr73321	transcription start site region 73321	1770 bp upstream
Tssr73322	transcription start site region 73322	1717 bp upstream
Tssr73323	transcription start site region 73323	1259 bp upstream
Tssr73324	transcription start site region 73324	1250 bp upstream