rs259447621 SNP Detail

Summary

• ID
  rs259447621
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5914016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGAAGG GCCAGGGAGT
  AATTTCCCCT TTCCATCCTT TACAATAGCA GATAGCTACT CTGGAAGAAT TCACTTCTGT
  TGTCAAGGTT TCTTGTTTCC CTGTGGCCAG TGCAAAGAAA TCATTAAAGT TTGGTGGTAT
  CCATAGTCCT GGACTTGGGA AATGACATTT AAAAATATGC ATGTGTATAT GTGTGTGTGT
  G
  TGTGTGTGTG TGCGCATATA TATATATATA TATATACATA TATATATATA TATATATATA
  TATATATATG CATATGTATA TGTATATCTC TTAGGTCCCA GCTACACAGA AAATGAGAGG
  TTTCTTTTCA AATGTATCGA TGCCCATGAA GTGAATACAG ACAGCTATCT GCTGCCTGTT
  CTCTGACTAC AGCCAGCCCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387606005	MGP_WTSI_13_5863263	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259447621					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387606005	MGP_WTSI_13_5863263	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5914016 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	1446 bp downstream
Rr403559	regulatory region 403559	523 bp upstream
Tssr118244	transcription start site region 118244	1396 bp downstream
Tssr118245	transcription start site region 118245	1145 bp downstream
Tssr118246	transcription start site region 118246	191 bp downstream
Tssr118247	transcription start site region 118247	121 bp downstream
Tssr118248	transcription start site region 118248	469 bp upstream
Tssr118249	transcription start site region 118249	674 bp upstream
Tssr118250	transcription start site region 118250	733 bp upstream
Tssr118251	transcription start site region 118251	753 bp upstream
Tssr118252	transcription start site region 118252	833 bp upstream
Tssr121319	transcription start site region 121319	288 bp downstream
Tssr121320	transcription start site region 121320	312 bp downstream
Tssr121321	transcription start site region 121321	335 bp downstream
Tssr121322	transcription start site region 121322	356 bp downstream