rs259448062 SNP Detail

Summary

• ID
  rs259448062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:34724348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACCACC CAGCACCGTA
  TTTATCCTTC TGCAGTCAAA CCCGCAGCGA AGCGGTCCGA CCGAAGACTA CACCGACCCG
  GAAGGCGGCT CCAGAGAACT CAGGTTCCTG AGAACAGGCG TTCCTCCCAC CTCCTCCCGG
  TTCACCCTTC CCGACGCTCG CCCTTACCTC TCTCCTCACG CTTCCTGGCT GCTGCAACCG
  R
  AGGCCTGTCC GGAGAGCACT GGACTCCCAG ATTCGTGACA CTAACTCCAC CTCAGCACAG
  AAATAACTCC CTCTTCACTC GGCAGCAGCA CTGCTAAGTA AGCGCCGGGG ATTTTTGAAT
  ACGGTTCCCG CGAGAACTCA CGTTTCTCAC GAGATGTCTT GTCCAATCCG CGCCTCCGGG
  GCAAACGAGT GGGGCGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382963791	MGP_WTSI_11_34647023	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259448062					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382963791	MGP_WTSI_11_34647023	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34724348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	within coordinates
Gm57348	predicted gene, 57348	161 bp upstream
Rr402479	regulatory region 402479	within coordinates
Rr444978	regulatory region 444978	within coordinates
Rr444979	regulatory region 444979	110 bp proximal
Rr444980	regulatory region 444980	194 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	mRNA-UTR
Tssr100930	transcription start site region 100930	198 bp upstream
Tssr100931	transcription start site region 100931	265 bp upstream
Tssr107398	transcription start site region 107398	63 bp downstream
Tssr107399	transcription start site region 107399	82 bp downstream
Tssr107400	transcription start site region 107400	110 bp downstream