rs259449970 SNP Detail

Summary

• ID
  rs259449970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106108050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACCGCGC GTACGCAGGG
  CCGCGGGGGT TCTTTCGCGC CGACTGGAGT AGCAACTGCG TCTGCAGCCG CGGCAGCGGG
  TTTGGGTGAA GGGCTCGCCA GACGCAGTGC CGCTAGCCCG GGGGACACGA GAGGTAACTG
  GGGCCTGGCG AGGGCGGAGG AACCTCGGCC TCGTTTAACA AAGAATCGGC AGAGCCTGGG
  R
  ACCCGGGTGG CTGCGGGGGT CCGGGCAGGG ATGGGTACGC GATCTGGAGC CCCGAGGTGG
  CCCTCTGGAG CTACGTTGCC TTCCCACGGC TCTGCTCCTT GCACGTCTTA ACGAGGCCCA
  CTTGGCGGCT TTCCGGAGGC GGTGCTTGAT GGGCTCCAGG AAGGGATTTT TCAGGGTGCT
  GGGCTCCGAA GCTGTGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384584126	MGP_WTSI_11_106078538	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259449970					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384584126	MGP_WTSI_11_106078538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106108050 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	701 bp upstream
Cpgi4018	CpG island 4018	within coordinates
Ddx42	DEAD box helicase 42	within coordinates
Gm74325	predicted gene, 74325	625 bp downstream
Rr369397	regulatory region 369397	340 bp downstream
Rr403037	regulatory region 403037	658 bp downstream
Tssr105500	transcription start site region 105500	747 bp downstream
Tssr105501	transcription start site region 105501	692 bp downstream
Tssr105502	transcription start site region 105502	256 bp downstream
Tssr105503	transcription start site region 105503	248 bp downstream
Tssr105504	transcription start site region 105504	216 bp downstream
Tssr105505	transcription start site region 105505	166 bp downstream
Tssr111304	transcription start site region 111304	907 bp upstream
Tssr111305	transcription start site region 111305	861 bp upstream