rs259450939 SNP Detail

Summary

• ID
  rs259450939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTTTCC AGATTATCTG
  ACTCTAGTCT GTCATTTATC CTGATTTTAG TTTTTCTTGA CATTGAGCAA TTTTAGTCTC
  TGAAGTTGCA GCTAATTGAT AAGTCATATA AAATATGTCC ACTAGTGAGA CAGCTTCAAG
  AGTCTTAATG TATAAATGAG CTTATTTATA TTATGCTTTT TAAAATTGTG GTAAAATATA
  Y
  ATAGCACAAA ACCTTATCAT CTCAACCACC TTTAAATGTA AAGTCAGGGC AGCTAAAGTC
  AGGGACAGCA AGTGTACTGT GCGCCCATCG CTACCATCCA CATCCACCTT ACGGCAACTC
  TCCCCTCCCC TTGAATTCTC TTTCTACCCA ATTATGACAT CTTCTAGCTC CTTCATTATG
  AGGGCAGTAC ACGCTCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377237250	MGP_WTSI_9_37061669	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259450939					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377237250	MGP_WTSI_9_37061669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	1088 bp proximal
Gm10177	predicted gene 10177	903 bp downstream
Gm48081	predicted gene, 48081	1414 bp upstream
Gm65989	predicted gene, 65989	719 bp downstream
Rr676656	regulatory region 676656	590 bp proximal
Rr676657	regulatory region 676657	1320 bp proximal
Rr676658	regulatory region 676658	1425 bp proximal
Rr676659	regulatory region 676659	1644 bp proximal
Rr676660	regulatory region 676660	1952 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	1273 bp downstream
Tssr88822	transcription start site region 88822	1297 bp downstream
Tssr88823	transcription start site region 88823	1319 bp downstream
Tssr88824	transcription start site region 88824	1345 bp downstream
Tssr88825	transcription start site region 88825	1360 bp downstream
Tssr88826	transcription start site region 88826	1446 bp downstream
Tssr88827	transcription start site region 88827	1539 bp downstream
Tssr88828	transcription start site region 88828	1562 bp downstream
Tssr88829	transcription start site region 88829	1585 bp downstream
Tssr88830	transcription start site region 88830	1601 bp downstream
Tssr88831	transcription start site region 88831	1646 bp downstream