rs259454196 SNP Detail

Summary

• ID
  rs259454196
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8730753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCGTTA GATTTTTTTT
  TCCTCTCTAT TTAGCCCCAA CATGTCTCTT TCCTCCAAAT TCTTTTGGCA GTTCGTTTTC
  TAAATCTGTA TATAAAATTC CGACTATCTA GTTGTTCTTT TTAATAAGCC ATTTCCCAAT
  CCTTTCTTAA ATAGCAACAG ACAAACATGA GTGACTTGAC CTAAATCAGG GCTGTCACAA
  S
  CGGAGGAGCT CCGGGAGACA GGCGCTTGCT GAAAGGTGCA TTAGCTCAGT TGAAAGAGGA
  TTGGGGTGAT GTATTCACTG CTCAAGAACC CATGTGCTGT TGAAGGTGCA CTTGGCTGGC
  AAGCACATAC TGCTCTCCCC ACCCCACAAA GCAAAGCAGG CAGGGACTGC ACCAATCCCA
  GACTGCGCTT GCTACCACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356905114	MGP_WTSI_3_8665693	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259454196					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356905114	MGP_WTSI_3_8665693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8730753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12961	CpG island 12961			572 bp distal
Cpgi12962	CpG island 12962			822 bp proximal
Gm64520	predicted gene, 64520			838 bp upstream
Hey1	hairy/enhancer-of-split related with YRPW motif 1			Intron
				mRNA-UTR
Rr573305	regulatory region 573305			984 bp distal
Rr573306	regulatory region 573306			348 bp proximal
Rr573307	regulatory region 573307			1451 bp proximal
Rr573308	regulatory region 573308			1553 bp proximal
Tssr32550	transcription start site region 32550			89 bp downstream
Tssr32551	transcription start site region 32551			1140 bp downstream
Tssr32552	transcription start site region 32552			1270 bp downstream
Tssr32553	transcription start site region 32553			1304 bp downstream
Tssr32554	transcription start site region 32554			1340 bp downstream
Tssr32555	transcription start site region 32555			1356 bp downstream
Tssr32556	transcription start site region 32556			1584 bp downstream