rs259462584 SNP Detail

Summary

• ID
  rs259462584
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194660159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGCTAAT GGTGCCACCA
  TGTTATGCAA CACTTATATA ATCTCCCATG GTGATAGCTC TGTCTCTGTT CTGAGGTCAC
  ACTGATAGGG TGCCCATCTC CATGTAGGAG AAAGGATCTG TGGAAGTTTT TGGATAGAGC
  TATTCTCCCA GCTCATCCCC AGACAGGCTC CTTCTGATCC TGGAACAGGA GGGTTTGACC
  W
  AGCAGGTTCT CAGTGTACCC CAGGAGTCTA GTAGTAAGAA AGGTGCTGAC TGGGCAGTCT
  TCTCCATTTC ATCCTGCCTA GTGAGTTGTT TGGTTAAGTG GATGCCATTC TCCCCGGCAT
  GGCAGGTGGA TATGGTGGAA TGACTCCAAG ATGTGGAACA TATCCATACA TTGTGCTTGA
  TAATAAGGAT TAGTTCTGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352898181	MGP_WTSI_1_196804045	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259462584					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352898181	MGP_WTSI_1_196804045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194660159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1249	CpG island 1249	776 bp distal
Gm16897	predicted gene, 16897	892 bp upstream
Rr426734	regulatory region 426734	1426 bp distal
Rr426735	regulatory region 426735	1518 bp distal
Rr426736	regulatory region 426736	902 bp distal
Rr426737	regulatory region 426737	1188 bp distal
Rr426738	regulatory region 426738	401 bp distal
Rr426739	regulatory region 426739	600 bp proximal
Tssr10848	transcription start site region 10848	1460 bp downstream
Tssr10849	transcription start site region 10849	1420 bp downstream
Tssr10850	transcription start site region 10850	792 bp downstream