rs259469077 SNP Detail

Summary

• ID
  rs259469077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86286832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAGCTC CTCCGATCTC
  TCCTCACACC GTCCCCTCCC GCCCGCTACA TCCGAACCCT CGATATCGCC CTCCCGGAAA
  CCTGCCTCCG CTCTTCTCAT CCCCCTAAGT CAGAGGGCAA GCACCGCGAG ACCTCCCGCT
  AGTCGCGCGA GACTTTCCCC CCCAGCATGG CGCCCTCGAA CGCGCCCGGG ATTGCGCGCA
  R
  GCCCTCCTCC CCTCCGCGAC GGACGGGCGG GCGCGCGCGC GTCCCTCCGA AAGCAGGGGC
  CTAGTCGTCC GCGTCGGCGC GCCAAGGCCT CTTACCTTTG CGAGCTTCAC CATGGTGGCG
  GATTACGGCG GCGGCGCGTG TGGAGAGCGA GCAGCTCGGA AGAGCTCAGC GGAAGCCACA
  CGAAAGCGAC TGCAGTAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350367762	MGP_WTSI_1_88255685	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259469077					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350367762	MGP_WTSI_1_88255685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86286832 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	474 bp upstream
Cpgi503	CpG island 503	within coordinates
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	1002 bp distal
Gm71192	predicted gene, 71192	542 bp downstream
Ncl	nucleolin	within coordinates
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	205 bp upstream
Tssr7747	transcription start site region 7747	1997 bp downstream
Tssr7748	transcription start site region 7748	1816 bp downstream
Tssr7749	transcription start site region 7749	443 bp upstream
Tssr7750	transcription start site region 7750	528 bp upstream
Tssr12778	transcription start site region 12778	1961 bp upstream
Tssr12779	transcription start site region 12779	1942 bp upstream
Tssr12780	transcription start site region 12780	1889 bp upstream
Tssr12781	transcription start site region 12781	1841 bp upstream
Tssr12782	transcription start site region 12782	1766 bp upstream
Tssr12783	transcription start site region 12783	1732 bp upstream
Tssr12784	transcription start site region 12784	1705 bp upstream
Tssr12785	transcription start site region 12785	1676 bp upstream
Tssr12786	transcription start site region 12786	878 bp upstream
Tssr12787	transcription start site region 12787	629 bp upstream
Tssr12788	transcription start site region 12788	113 bp upstream
Tssr12789	transcription start site region 12789	64 bp upstream
Tssr12790	transcription start site region 12790	248 bp downstream
Tssr12791	transcription start site region 12791	371 bp downstream
Tssr12792	transcription start site region 12792	841 bp downstream