rs259471580 SNP Detail

Summary

• ID
  rs259471580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29230159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACAAGG GTGTCTGAGA
  TCTGCGAGCC AGTGCCTGCT AAGAAGGCTG GATGCTTGTG TACAACGGCA GGACTAATTG
  TTGCTTACTG CGAAAATGGC AGTGTTGAAC TTTTCCTGTT GCTGTGGGAG AGTAATTGGG
  TGGTATTTAT TGTGTCTCTT GGATCCTTAA AGAAGCGGTC TTTGTTGGTT TTACAGTGTG
  R
  TCTTGCAGAG GAAAACAATA AGTCGTCTCT TTCTCCCCCT TTCTCCCCAG TCTTAATTTT
  CAAGGAATTG AAATAACCTG TTGAGGGAAC AAATTGGTTG TTTTTGCTGG GTTTCTGCTG
  CCACATTGAA TGCTTCCTGT ATTCACCTGC TTGCTTTGTT GGTTGATTGC TTTCCGGTGG
  TTACTAGTCT ATCAGGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325789622	CHEV_19_29327249	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259471580					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29230159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	304 bp distal
Gm41829	predicted gene, 41829	434 bp upstream
Gm59364	predicted gene, 59364	1258 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	1087 bp upstream
Rr546087	regulatory region 546087	1432 bp distal
Rr546088	regulatory region 546088	921 bp distal
Rr546089	regulatory region 546089	1136 bp distal
Rr546090	regulatory region 546090	308 bp distal
Rr546091	regulatory region 546091	within coordinates
Rr546092	regulatory region 546092	1211 bp proximal
Rr546093	regulatory region 546093	1981 bp proximal
Tssr155780	transcription start site region 155780	1094 bp downstream
Tssr155781	transcription start site region 155781	905 bp downstream
Tssr155782	transcription start site region 155782	892 bp downstream
Tssr155783	transcription start site region 155783	858 bp downstream
Tssr155784	transcription start site region 155784	446 bp downstream
Tssr155785	transcription start site region 155785	317 bp downstream
Tssr155786	transcription start site region 155786	274 bp downstream
Tssr155787	transcription start site region 155787	169 bp downstream
Tssr158749	transcription start site region 158749	654 bp upstream