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rs259476405 SNP Detail
Summary
  • ID
    rs259476405
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130387 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCACTCCTAC CCATCTTTTA
TTCTTCCTTT TTCTCTTCTT CTCCATCGTT AATTCAACTC TTCTTTCCCT TCTGTTCCTC
AATTCTCCTC CTCCCTGCTT CTTCATTTCT TTGAATACTA TCCATCTTCA TCCCTCTTTC
TCTTCATTCC TCTCTTCTAC CCTTTCTTTT CCTTCTGTTC CTCCACATGC ATCCCTGTGG
K
TTTCCACACA TTCTCTCTCC TCTCTTTCCC CTTCACCCTC TACCTCCTCC TCTGTCTTTC
CTTGTCCTTT GGTTTCCTCT ACAGTGTCTC ATCCAATATC TCCTGCTGTT CTTCCTTCTC
TCTGGCATTT ACACTGTTTC TGCTTCTGTT TCTCCTAATT ATTTCTACTC CGTCTCCTCT
ATCCCTCCTC TCCTTTAACT                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156150 MGP_WTSI_7_51736333 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T G T T T T T T T T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259476405 SNP T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T G T T T T T T T T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156150 MGP_WTSI_7_51736333 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130387 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1621 bp proximal
Tssr2227 transcription start site region 2227 1943 bp downstream
Tssr2228 transcription start site region 2228 880 bp downstream
Tssr2229 transcription start site region 2229 605 bp downstream
Tssr2230 transcription start site region 2230 422 bp downstream
Tssr2231 transcription start site region 2231 295 bp downstream
Tssr2232 transcription start site region 2232 121 bp downstream
Tssr2233 transcription start site region 2233 76 bp downstream
Tssr2234 transcription start site region 2234 70 bp upstream
Tssr2235 transcription start site region 2235 704 bp upstream
Tssr66294 transcription start site region 66294 1993 bp downstream
Tssr66295 transcription start site region 66295 1728 bp downstream
Tssr66296 transcription start site region 66296 1557 bp downstream
Tssr66297 transcription start site region 66297 1533 bp downstream
Tssr66298 transcription start site region 66298 1478 bp downstream
Tssr66299 transcription start site region 66299 1458 bp downstream
Tssr66300 transcription start site region 66300 1435 bp downstream
Tssr66301 transcription start site region 66301 1419 bp downstream
Tssr66302 transcription start site region 66302 1378 bp downstream
Tssr66303 transcription start site region 66303 1369 bp downstream
Tssr66304 transcription start site region 66304 1364 bp downstream
Tssr66305 transcription start site region 66305 1325 bp downstream
Tssr66306 transcription start site region 66306 1271 bp downstream
Tssr66307 transcription start site region 66307 1222 bp downstream
Tssr66308 transcription start site region 66308 1205 bp downstream
Tssr66309 transcription start site region 66309 1155 bp downstream
Tssr66310 transcription start site region 66310 1086 bp downstream
Tssr66311 transcription start site region 66311 1063 bp downstream
Tssr66312 transcription start site region 66312 1044 bp downstream
Tssr66313 transcription start site region 66313 1034 bp downstream
Tssr66314 transcription start site region 66314 1016 bp downstream
Tssr66315 transcription start site region 66315 1009 bp downstream
Tssr66316 transcription start site region 66316 944 bp downstream
Tssr66317 transcription start site region 66317 928 bp downstream
Tssr66318 transcription start site region 66318 887 bp downstream
Tssr66319 transcription start site region 66319 859 bp downstream
Tssr66320 transcription start site region 66320 835 bp downstream
Tssr66321 transcription start site region 66321 811 bp downstream
Tssr66322 transcription start site region 66322 795 bp downstream
Tssr66323 transcription start site region 66323 757 bp downstream
Tssr66324 transcription start site region 66324 704 bp downstream
Tssr66325 transcription start site region 66325 663 bp downstream
Tssr66326 transcription start site region 66326 653 bp downstream
Tssr66327 transcription start site region 66327 633 bp downstream
Tssr66328 transcription start site region 66328 615 bp downstream
Tssr66329 transcription start site region 66329 576 bp downstream
Tssr66330 transcription start site region 66330 563 bp downstream
Tssr66331 transcription start site region 66331 549 bp downstream
Tssr66332 transcription start site region 66332 516 bp downstream
Tssr66333 transcription start site region 66333 481 bp downstream
Tssr66334 transcription start site region 66334 475 bp downstream
Tssr66335 transcription start site region 66335 464 bp downstream
Tssr66336 transcription start site region 66336 450 bp downstream
Tssr66337 transcription start site region 66337 434 bp downstream
Tssr66338 transcription start site region 66338 350 bp downstream
Tssr66339 transcription start site region 66339 318 bp downstream
Tssr66340 transcription start site region 66340 251 bp downstream
Tssr66341 transcription start site region 66341 202 bp downstream
Tssr66342 transcription start site region 66342 173 bp downstream
Tssr66343 transcription start site region 66343 147 bp downstream
Tssr66344 transcription start site region 66344 within coordinates
Tssr66345 transcription start site region 66345 26 bp upstream
Tssr66346 transcription start site region 66346 82 bp upstream
Tssr66347 transcription start site region 66347 120 bp upstream
Tssr66348 transcription start site region 66348 161 bp upstream
Tssr66349 transcription start site region 66349 185 bp upstream
Tssr66350 transcription start site region 66350 213 bp upstream
Tssr66351 transcription start site region 66351 221 bp upstream
Tssr66352 transcription start site region 66352 257 bp upstream
Tssr66353 transcription start site region 66353 331 bp upstream
Tssr66354 transcription start site region 66354 345 bp upstream
Tssr66355 transcription start site region 66355 372 bp upstream
Tssr66356 transcription start site region 66356 389 bp upstream
Tssr66357 transcription start site region 66357 403 bp upstream
Tssr66358 transcription start site region 66358 415 bp upstream
Tssr66359 transcription start site region 66359 441 bp upstream
Tssr66360 transcription start site region 66360 453 bp upstream
Tssr66361 transcription start site region 66361 479 bp upstream
Tssr66362 transcription start site region 66362 511 bp upstream
Tssr66363 transcription start site region 66363 528 bp upstream
Tssr66364 transcription start site region 66364 561 bp upstream
Tssr66365 transcription start site region 66365 581 bp upstream
Tssr66366 transcription start site region 66366 601 bp upstream
Tssr66367 transcription start site region 66367 629 bp upstream
Tssr66368 transcription start site region 66368 651 bp upstream
Tssr66369 transcription start site region 66369 685 bp upstream
Tssr66370 transcription start site region 66370 727 bp upstream
Tssr66371 transcription start site region 66371 1152 bp upstream
Tssr66372 transcription start site region 66372 1315 bp upstream
Tssr66373 transcription start site region 66373 1605 bp upstream
Tssr66374 transcription start site region 66374 1663 bp upstream
Tssr66375 transcription start site region 66375 1674 bp upstream
Tssr66376 transcription start site region 66376 1687 bp upstream
Tssr66377 transcription start site region 66377 1726 bp upstream
Tssr66378 transcription start site region 66378 1748 bp upstream
Tssr66379 transcription start site region 66379 1760 bp upstream
Tssr66380 transcription start site region 66380 1793 bp upstream
Tssr66381 transcription start site region 66381 1812 bp upstream
Tssr66382 transcription start site region 66382 1836 bp upstream
Tssr66383 transcription start site region 66383 1946 bp upstream
Tssr72202 transcription start site region 72202 1155 bp upstream
Tssr72203 transcription start site region 72203 775 bp upstream
Tssr72204 transcription start site region 72204 175 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory