rs259476551 SNP Detail

Summary

• ID
  rs259476551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85919734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGACGG GTGCGACCCA
  CTTCTAAAAC CTCCTCTGGT AGACATTAGC TCTGAACAGC CAAATGAGAG GCAACTGAAG
  TCTTACTGTG TTTAGGCATC CCGGCTGGCA TCCCGGCCAC CATCGTCCTG TGTTGGCCTG
  GGGCTCAGGA GAGAGCAGAA GCTCCGGTAG TTAACCTCGG GGGTCCTCTA AGCAAGCACC
  R
  TGAGCATTAG GGGGCGAGAC TCTCCTTCTT GGTGTCCCAG GCACAGCTGC ACTTACAACT
  GCAAACTAAC AGGGCCCGCC CCCTCGGCTC CTCCTTAAAC CCTTCACCCC AACTTTAAGC
  TCCCAGTAGG AGGGCCAGAG CTAGAGTCAC TGCCCCCCCA CCCCCCATCG TGGGGCAAAG
  CCACTTTTCA GGGTCCCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486749	CHEV_17_86011646	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259476551					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85919734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	350 bp proximal
Cpgi9588	CpG island 9588	1298 bp proximal
Gm55781	predicted gene, 55781	543 bp downstream
Gm55782	predicted gene, 55782	1076 bp upstream
Six3	sine oculis-related homeobox 3	1302 bp upstream
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	920 bp upstream
Tssr146085	transcription start site region 146085	1126 bp upstream
Tssr149705	transcription start site region 149705	25 bp downstream
Tssr149706	transcription start site region 149706	748 bp downstream