rs259478037 SNP Detail

Summary

• ID
  rs259478037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91012959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAACGT GGTTCTCCAA
  ACGCTAGTCA AAAAAAAAAT AAAAAAAAAT AAGGCGTGCG CACGCACGCG CACACACGCC
  AGGCGCCGGT GCCTTCCTCG GGCCCGGGGC TGGACAGCTC TGGCCGCCCC CTCACCTGCT
  GGACAGCTCC TCGTCCCCAC CCGGGAAGCC GCCCCGCGGG CCCACAGCCC CGCAGCCGCA
  Y
  GGGCTCCCCG CCCGACCCCC GCCTCACTTT CTCAGCAGGC TCCACGCCCC CTCGCGCTCG
  CTCGCTCCTC CAGGGCCGCC TCAGAGACCC TCTCCTCCCG GAGCCGCTTT TCCTCTCAGG
  CTCCGCGTTC CCCCTCAAAG CCCCACACGG GGCTCCCGAC CGCGGGCGCT CAGCTACCTA
  CTCTCGGAGG AGGCTGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354809286	MGP_WTSI_2_91022771	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259478037					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354809286	MGP_WTSI_2_91022771	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91012959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	within coordinates
Gm74571	predicted gene, 74571	152 bp downstream
Madd	MAP-kinase activating death domain	within coordinates
Nr1h3	nuclear receptor subfamily 1, group H, member 3	1447 bp downstream
Rr367225	regulatory region 367225	1274 bp upstream
Rr397125	regulatory region 397125	485 bp upstream
Tssr18868	transcription start site region 18868	402 bp downstream
Tssr25161	transcription start site region 25161	254 bp downstream
Tssr25162	transcription start site region 25162	327 bp downstream
Tssr25163	transcription start site region 25163	403 bp downstream
Tssr25164	transcription start site region 25164	1209 bp downstream
Tssr25165	transcription start site region 25165	1227 bp downstream
Tssr25166	transcription start site region 25166	1340 bp downstream
Tssr25167	transcription start site region 25167	1363 bp downstream