rs259479917 SNP Detail

Summary

• ID
  rs259479917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCTGTT GGCTTCACCA
  CTTTCTCTCC ATCAAGGCCT CTGCTCTCTA CTCTTCCTTC CTCATTACCA AAGCTGAATA
  GTTATAAGTC TTTGTATTCC TGGGGGGGGG GGGGCAGTCA GAAATGCTTT TAGTTCCCAG
  AAAGAGGAGT AGTTTTCTCT TTTTTTTTTT TTTTTTCACA TGTGACTAGT CTAGCAGTCA
  W
  CTAGACTCTG TCTTGCATTT CTGGATGCCC ATAAAATATC GGATGTGATT TTACTCTTAA
  CCCAGTTATT TGGGGATTAC AGTTTCTAAA ATTTATATTT TAGGAAGATG GTGATGCTGG
  TACTAGTGGT GATGAAAATG CTGCAATTAA AAAAAAAAAA ACAAGTTATT GTCTATGCAC
  ATAAGATCTA TTTGTATAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025262	MGP_WTSI_X_9014028	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259479917					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025262	MGP_WTSI_X_9014028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303141 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	mRNA-UTR
Tssr160517	transcription start site region 160517	1403 bp downstream
Tssr160518	transcription start site region 160518	901 bp downstream
Tssr160519	transcription start site region 160519	257 bp downstream
Tssr160520	transcription start site region 160520	193 bp downstream
Tssr160521	transcription start site region 160521	139 bp downstream
Tssr160522	transcription start site region 160522	22 bp downstream
Tssr162873	transcription start site region 162873	1254 bp upstream
Tssr162874	transcription start site region 162874	998 bp upstream
Tssr162875	transcription start site region 162875	975 bp upstream
Tssr162876	transcription start site region 162876	819 bp upstream
Tssr162877	transcription start site region 162877	800 bp upstream
Tssr162878	transcription start site region 162878	748 bp upstream
Tssr162879	transcription start site region 162879	642 bp upstream
Tssr162880	transcription start site region 162880	556 bp upstream
Tssr162881	transcription start site region 162881	538 bp upstream
Tssr162882	transcription start site region 162882	238 bp upstream
Tssr162883	transcription start site region 162883	139 bp downstream
Tssr162884	transcription start site region 162884	181 bp downstream
Tssr162885	transcription start site region 162885	225 bp downstream
Tssr162886	transcription start site region 162886	272 bp downstream
Tssr162887	transcription start site region 162887	299 bp downstream
Tssr162888	transcription start site region 162888	352 bp downstream
Tssr162889	transcription start site region 162889	382 bp downstream
Tssr162890	transcription start site region 162890	442 bp downstream
Tssr162891	transcription start site region 162891	476 bp downstream
Tssr162892	transcription start site region 162892	529 bp downstream
Tssr162893	transcription start site region 162893	633 bp downstream
Tssr162894	transcription start site region 162894	663 bp downstream
Tssr162895	transcription start site region 162895	723 bp downstream
Tssr162896	transcription start site region 162896	749 bp downstream
Tssr162897	transcription start site region 162897	776 bp downstream
Tssr162898	transcription start site region 162898	800 bp downstream
Tssr162899	transcription start site region 162899	946 bp downstream
Tssr162900	transcription start site region 162900	956 bp downstream
Tssr162901	transcription start site region 162901	987 bp downstream
Tssr162902	transcription start site region 162902	1069 bp downstream
Tssr162903	transcription start site region 162903	1130 bp downstream
Tssr162904	transcription start site region 162904	1231 bp downstream
Tssr162905	transcription start site region 162905	1315 bp downstream
Tssr162906	transcription start site region 162906	1319 bp downstream
Tssr162907	transcription start site region 162907	1392 bp downstream
Tssr162908	transcription start site region 162908	1416 bp downstream