rs259480621 SNP Detail

Summary

• ID
  rs259480621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80308634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTCATT TCAGAACCAC
  TGCAGATACC AGAATCTGCA AGAGCTTATG CCTCACATGT ATAGAACAGC ACAAAATTGA
  TTGATATGTA ACCTACTTAC AGCCACTGTA CACTTTAAAT CATTCCCAAA TAGAAAAGCC
  ATGTGACTCG GGAACTGGAG AGATGGATCA GCGTTTAAGA GCACTGACTG CTCTTTCAGA
  R
  GAAAGGACCC GGGTTCAATT CCCAGCACCC ACATGGCAGC TCAGTCCTAT CTGTAACTCC
  AGTTCCAGGG CTTCTAATAC TATCACACAG ATGTGCATGC AGCCAAAAAG AAAAAGGGGG
  GGGGGGGAAA CATAAAAGGA AAAGAAATGT CATGTGACTA CTCACGCTGT TGAGAAAATC
  CTGACAGGAA AATGAAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386629975	MGP_WTSI_12_81362847	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259480621					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386629975	MGP_WTSI_12_81362847	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80308634 () rs orientation: forward

Symbol	Name	Function Class
Actn1	actinin, alpha 1	1489 bp upstream
Cpgi4813	CpG island 4813	808 bp distal
Gm47766	predicted gene, 47766	292 bp downstream
Rr468867	regulatory region 468867	1780 bp distal
Rr468869	regulatory region 468869	999 bp distal
Tssr116876	transcription start site region 116876	1651 bp upstream
Tssr116877	transcription start site region 116877	1535 bp upstream
Tssr116878	transcription start site region 116878	1508 bp upstream
Tssr116879	transcription start site region 116879	1489 bp upstream
Tssr116880	transcription start site region 116880	1460 bp upstream
Tssr116881	transcription start site region 116881	1355 bp upstream
Tssr116882	transcription start site region 116882	1317 bp upstream