rs259483718 SNP Detail

Summary

• ID
  rs259483718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46117190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACACACG CACCTACACA
  CTCACACGCA CTTACTCCCT CCTCTCCGAC CCCGCCTCAC CTCTCGCTCC GCCCGTCCGG
  CCCCTTCCCT GCCCCCTGCG GGACCGGCCT GCGCGCTCGG CTGCAACCAC GTAGGAGGCG
  GCGGCGGTGG CGGCGGCAGC CCTGGCAGTG GCAGTGGCGG CGACTCGGGC CCCGAGTGAA
  Y
  GAGCCGCGGG GCTCCGGGGC ACATCCCAAT CCCCGCAGCG CCTCCTCCGC CGCCACCTCC
  TCCTTCCCCT CCTCCCGTCT TCATTCACCC TCTCTGCCGC CGCGCAGCAG AGCAGTCCCG
  GCGCAGGGCA GCGCCCGCAG CTCCTCCGCT ACTGCTGCGG GCGCCGGCAG AGTCGCCGGG
  CCGGGCTGGG GCGCTCGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388491974	MGP_WTSI_13_46059083	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259483718					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388491974	MGP_WTSI_13_46059083	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46117190 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	1510 bp upstream
Atxn1	ataxin 1	within coordinates
Cpgi5536	CpG island 5536	within coordinates
Gm56575	predicted gene, 56575	1565 bp downstream
Rr403752	regulatory region 403752	1185 bp upstream
Rr478835	regulatory region 478835	1233 bp proximal
Rr478836	regulatory region 478836	1590 bp proximal
Tssr119584	transcription start site region 119584	1497 bp upstream
Tssr119585	transcription start site region 119585	1741 bp upstream
Tssr122339	transcription start site region 122339	within coordinates
Tssr122340	transcription start site region 122340	1250 bp downstream