rs259488590 SNP Detail

Summary

• ID
  rs259488590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120881235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA GACCCTTGGC GGAGCAGAGC
  R
  TGGCCTTTGT TTACTGCGGT GACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323870969	CHEV_11_120851723	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259488590					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120881235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	within coordinates
Csnk1d	casein kinase 1, delta	within coordinates
Gm53204	predicted gene, 53204	1034 bp upstream
Gm57327	predicted gene, 57327	766 bp upstream
Rr403207	regulatory region 403207	790 bp upstream
Rr461862	regulatory region 461862	1517 bp distal
Rr461863	regulatory region 461863	1198 bp distal
Rr461864	regulatory region 461864	within coordinates
Rr461865	regulatory region 461865	498 bp proximal
Rr461866	regulatory region 461866	650 bp proximal
Rr461867	regulatory region 461867	673 bp proximal
Rr461868	regulatory region 461868	777 bp proximal
Rr461869	regulatory region 461869	911 bp proximal
Rr461870	regulatory region 461870	1026 bp proximal
Tssr106388	transcription start site region 106388	149 bp upstream
Tssr106389	transcription start site region 106389	973 bp upstream
Tssr106390	transcription start site region 106390	1003 bp upstream
Tssr112430	transcription start site region 112430	611 bp downstream
Tssr112431	transcription start site region 112431	630 bp downstream
Tssr112432	transcription start site region 112432	669 bp downstream
Tssr112433	transcription start site region 112433	694 bp downstream
Tssr112434	transcription start site region 112434	851 bp downstream
Tssr112435	transcription start site region 112435	896 bp downstream