rs259489676 SNP Detail

Summary

• ID
  rs259489676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10950269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acaaaaaca aaaaaCAACT CTCAGCAAAG
  TTCTAGTAAC CAATTTCAAC CACTGGGTTA ATATTAATTT TTGATAAGCC CAATGATACA
  TAATGAAACt gaaaaggtca gtttaggaag tttggaagga cacgaaaaca cttgcctctc
  Y
  agaagggaga gggtaattaa cattcctcag accacaggga agaaagcgac ctgcgggtgg
  ggacatatcc cgcaggactg attgttgcct actgtcagac aagggaaatg cttgtcacct
  cattccctaa agaccaatca gtttaaaggg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319635052	CHEV_1_10870126	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259489676					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10950269 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	242 bp upstream
Rr11561	regulatory region 11561	within coordinates
Rr29991	regulatory region 29991	1469 bp distal
Rr370844	regulatory region 370844	780 bp downstream
Tssr5931	transcription start site region 5931	1430 bp downstream
Tssr5932	transcription start site region 5932	240 bp upstream