rs259495243 SNP Detail

Summary

• ID
  rs259495243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC AAGAGGGCAG GGGACCCAGA
  R
  AACGCAATGA CAATCATTGA TTAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002892	CHEV_3_142223211	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259495243					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266008 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gbp3	guanylate binding protein 3			mRNA-UTR
				Noncoding-Transcript-Variant
Rr398085	regulatory region 398085			63 bp upstream
Rr586453	regulatory region 586453			within coordinates
Rr586454	regulatory region 586454			175 bp proximal
Rr586455	regulatory region 586455			582 bp proximal
Tssr32157	transcription start site region 32157			142 bp downstream
Tssr32158	transcription start site region 32158			113 bp downstream
Tssr32159	transcription start site region 32159			81 bp downstream
Tssr32160	transcription start site region 32160			33 bp downstream
Tssr32161	transcription start site region 32161			104 bp upstream
Tssr32162	transcription start site region 32162			291 bp upstream
Tssr32163	transcription start site region 32163			325 bp upstream
Tssr32164	transcription start site region 32164			358 bp upstream
Tssr32165	transcription start site region 32165			374 bp upstream
Tssr32166	transcription start site region 32166			710 bp upstream
Tssr32167	transcription start site region 32167			1437 bp upstream