rs259495496 SNP Detail

Summary

• ID
  rs259495496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGCCTC AGACACCGCC
  CCCCACCCCC AACCCCAGCC TCACAAATGT CACAACTGCA GAGCAGAGAG CGCGCCTTCT
  GCAGCCCAGA GGCCCTTTCC TTTCACACAC TACTGAACAG CCCCACAACT TCTGAGGGCA
  CCCCACCGCA GAGTCCCAGC CTCACAGCTC AGCGCTTTCC CACTTCCGAG CCTCTCACGG
  Y
  TCGGATCTCA GTGGTCCCTC GCGGACAGCA GGAGCTCGCG CTGTCCCTCG GATCCCACCC
  TCAACCCGGC CACCAGCGAT CGGGTCGCGG TGGCCGCTGT CCCCGCCCGG CCTGCCGCGC
  CCGCCCAACT TGCAGTGAAC GAAAACCTCC CGCCCTCGGC CTCCCTCCTG CAAACTTCCC
  GGCTCCCGGG TACCCAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353652	CHEV_7_109398298	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259495496					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	within coordinates
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	294 bp proximal
Rr652564	regulatory region 652564	1137 bp proximal
Tssr2354	transcription start site region 2354	475 bp upstream
Tssr68328	transcription start site region 68328	91 bp downstream
Tssr68329	transcription start site region 68329	70 bp downstream
Tssr68330	transcription start site region 68330	436 bp upstream
Tssr73939	transcription start site region 73939	410 bp upstream
Tssr73940	transcription start site region 73940	363 bp upstream
Tssr73941	transcription start site region 73941	310 bp upstream
Tssr73942	transcription start site region 73942	225 bp upstream
Tssr73943	transcription start site region 73943	291 bp downstream
Tssr73944	transcription start site region 73944	302 bp downstream
Tssr73945	transcription start site region 73945	343 bp downstream
Tssr73946	transcription start site region 73946	539 bp downstream
Tssr73947	transcription start site region 73947	682 bp downstream
Tssr73948	transcription start site region 73948	707 bp downstream
Tssr73949	transcription start site region 73949	743 bp downstream
Tssr73950	transcription start site region 73950	792 bp downstream