rs259499233 SNP Detail

Summary

• ID
  rs259499233
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137720176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGT TTCTGAATCC GCTCCATCCC
  C
  TCCCAGCCAG GCGACCTTGG GGCAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321369515	CHEV_4_137548780	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259499233					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137720176 () rs orientation: forward

Symbol	Name	Function Class
BE691133	expressed sequence BE691133	within coordinates
Cpgi15142	CpG island 15142	within coordinates
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	1654 bp downstream
Rr86596	regulatory region 86596	1976 bp distal
Rr100351	regulatory region 100351	within coordinates
Rr398623	regulatory region 398623	432 bp upstream
Tssr39803	transcription start site region 39803	151 bp upstream
Tssr39804	transcription start site region 39804	175 bp upstream
Tssr39805	transcription start site region 39805	580 bp upstream
Tssr39806	transcription start site region 39806	613 bp upstream
Tssr39807	transcription start site region 39807	816 bp upstream
Tssr39808	transcription start site region 39808	1055 bp upstream
Tssr39809	transcription start site region 39809	1166 bp upstream
Tssr39810	transcription start site region 39810	1906 bp upstream
Tssr44154	transcription start site region 44154	419 bp downstream
Tssr44155	transcription start site region 44155	1847 bp downstream