rs259504166 SNP Detail

Summary

• ID
  rs259504166
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3030125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGTCCTA CAGGATGCAT TTCTCATTTT TCACGTTTTT
  CAGTGATTTC ATCATTTTTC AAGTCGTCAA GTGTATGTTT CTTATTTTCA ATGATTTTCA
  T
  TTTTCTTGCC TTATTCCACG TCCTATAGTG GACATTTCTA AATTTTCCAC CTTTTTTCAG
  TTTTTCTCGC CATATTTCAC GTCCTAAAGT GTGTATTTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss376472666	MGP_WTSI_9_3030125	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs259504166					SNP	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376472666	MGP_WTSI_9_3030125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3030125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21325	CpG island 21325	415 bp distal
Cpgi21326	CpG island 21326	1762 bp proximal
Rr673609	regulatory region 673609	1455 bp distal
Rr673610	regulatory region 673610	85 bp distal
Rr673611	regulatory region 673611	206 bp proximal
Tssr83588	transcription start site region 83588	730 bp downstream
Tssr83589	transcription start site region 83589	449 bp downstream
Tssr83590	transcription start site region 83590	30 bp upstream
Tssr83591	transcription start site region 83591	943 bp upstream
Tssr83592	transcription start site region 83592	973 bp upstream
Tssr83593	transcription start site region 83593	1759 bp upstream
Tssr83594	transcription start site region 83594	1874 bp upstream
Tssr88023	transcription start site region 88023	705 bp upstream
Tssr88024	transcription start site region 88024	1786 bp downstream