rs259504169 SNP Detail

Summary

• ID
  rs259504169
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCG ATGATGATCA TAGCTGTCCC
  M
  TCTCCGAATC TGTGCCATTT TCCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325034247	CHEV_15_82169912	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259504169					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223683 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naga	N-acetyl galactosaminidase, alpha			700 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2			Intron
				Noncoding-Transcript-Variant
Rr506479	regulatory region 506479			513 bp distal
Rr506480	regulatory region 506480			115 bp distal
Rr506481	regulatory region 506481			357 bp distal
Rr506482	regulatory region 506482			886 bp proximal
Rr506483	regulatory region 506483			1708 bp proximal
Tssr4669	transcription start site region 4669			607 bp upstream
Tssr132381	transcription start site region 132381			1717 bp upstream
Tssr135543	transcription start site region 135543			691 bp upstream
Tssr135544	transcription start site region 135544			628 bp upstream
Tssr135545	transcription start site region 135545			618 bp upstream