rs259508597 SNP Detail

Summary

• ID
  rs259508597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12657125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCGGTGG CAGAGACCCC
  TGACATCAAG CTCTTTGGGA AATGGAGCAC TGATGACGTG CAGATCAACG ATATTTCTCT
  GCAGGTAAAA GGAACTTAAT GATTGTTCTT TGTGATGATT TTTTTAATTG AGACCAGGTG
  TGGATGAGCT TCTAGTTCAG AAAAGGGCAT AAAACAACCA GTGGATGTAC AAGACAGGTA
  K
  AAGAGCAATA ACTGGACAGC TACACCCACG CCTAATACAA ACTGGCACTA AAAGATGTTA
  GAGTGTGGTT TTTATCCCGT ATTTTTCTAA TCGTGTGTCT CTTGAGACAG AGTCAGGGTC
  TTGCTGTGTA GCCCTTGCTG GCTGCCTGGA GCTCTTTGAG ATCTTGCCTC TGTCTCCCAT
  GTGCCACTAC ACCTGACTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322106848	CHEV_7_13508547	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259508597					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12657125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	413 bp distal
Gm57203	predicted gene, 57203	1071 bp upstream
Rps5	ribosomal protein S5	within coordinates
Rr368230	regulatory region 368230	950 bp downstream
Rr642402	regulatory region 642402	1108 bp distal
Rr642403	regulatory region 642403	898 bp distal
Rr642404	regulatory region 642404	801 bp distal
Tssr64485	transcription start site region 64485	878 bp downstream
Tssr64486	transcription start site region 64486	226 bp downstream
Tssr70626	transcription start site region 70626	1102 bp upstream