rs259509178 SNP Detail

Summary

• ID
  rs259509178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100427009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCTTTT GTGCTTCGTC
  ATTTTTAGCC ATGGTGACTT TGAGTGGATA ACAGGATTGT TAAATGGCTC AAAAGAAAGA
  ATGCCTGGGG AAATGATTAG TAAAGTTCCT AGCTTGATAA ACTCGGTACC CTGGTTTCCT
  CTCTTCTGGC TCATCCATAC CTGGAAAGGG ACCTACCCCT AGAAAACCTG CTGCTGACCC
  Y
  GTTTCTGGTA GAATATAGGG GAAGGCCTTA GTCCAGAGGA CCCTGATTCC CTGGGGTCCT
  GGCTTACTTG CACCTGTCTG TGTTCTATCT CCCTCCCCCA GAGCCATTAT TCTGGTGGGG
  CCATGGGGCG GGTGCGGCGA TGGACCGGGC GGGCACAGAA CAGGTGGGTG CAGGCTGGGT
  GTCCGGCGCT GGGACACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404178811	MGP_WTSI_X_98578742	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259509178					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404178811	MGP_WTSI_X_98578742	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100427009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	1262 bp proximal
Gjb1	gap junction protein, beta 1	within coordinates
Tssr161658	transcription start site region 161658	323 bp upstream
Tssr161659	transcription start site region 161659	362 bp upstream
Tssr161660	transcription start site region 161660	378 bp upstream
Tssr161661	transcription start site region 161661	893 bp upstream
Tssr161662	transcription start site region 161662	1040 bp upstream
Tssr161663	transcription start site region 161663	1087 bp upstream
Tssr161664	transcription start site region 161664	1227 bp upstream
Tssr161665	transcription start site region 161665	1457 bp upstream
Tssr163884	transcription start site region 163884	1241 bp downstream