rs259510823 SNP Detail

Summary

• ID
  rs259510823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80661502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAAAGAGC AGGGTGTGGT GCCACAGGCC TTTAATCCCA ACACTCAGCT GGCAGAGTCA
  GGCAGATCTC TGAGTTTGAG GGTAGCTTAG TTTATAGAGT AAGTTCCAGG ACATCCAGGG
  CTACACAGAA AAGCCCTGTC TCAAAAACAA AACATACAAA ACAAAACAAA ACAACAACAA
  M
  AAAAAACCCA TAAAGAGAAA AAGAATACGA AATTCTTTAA GAATAAATTG TAAGCAGGGC
  AGTGATGGCG CACGCCTTTG ATCCCAGCAC TTGGGAGGCA GAGGCAGGCA AACAGAGAAA
  CCCTGTCTCA AAAAACAAAA ATCAAAATAC AACAACAAAA AAGCGGCGGC GGCGGGGGAG
  GGGGGGTTGG GATGAAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025636	MGP_WTSI_10_80288413	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259510823					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025636	MGP_WTSI_10_80288413	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80661502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1912	CpG island 1912	528 bp proximal
Gm68058	predicted gene, 68058	211 bp downstream
Gm68060	predicted gene, 68060	702 bp upstream
Oaz1	ornithine decarboxylase antizyme 1	1014 bp upstream
Rr402063	regulatory region 402063	578 bp upstream
Rr435409	regulatory region 435409	810 bp distal
Rr435410	regulatory region 435410	212 bp proximal
Rr435411	regulatory region 435411	530 bp proximal
Rr435412	regulatory region 435412	1396 bp proximal
Tssr94629	transcription start site region 94629	699 bp upstream
Tssr94630	transcription start site region 94630	1001 bp upstream
Tssr98520	transcription start site region 98520	543 bp downstream
Tssr98521	transcription start site region 98521	1320 bp downstream