rs259511012 SNP Detail

Summary

• ID
  rs259511012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144111732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAACAAA AAAAAAAATG
  TTTGCCCATT CAAAGGTACT TAAAATGAAA TCTTAATTCA GCTCTTATTA AAATCTAAGA
  GCTCCCATAT TACTGACGAT TTTGTCCACA AAACTGACTC ATAACCTACC TGTGCGGTGG
  AAAATTCAAG TTTAAAGAGC CAATAAAAGT AGAATCCTTT ATTGCCCGTA TAGCAATCCC
  Y
  GTTTATTGCA TTAGTCCTCA AGATATTTGC AGCCCGAGGG TTATATCAAC ACACAGGATT
  TACTAAAAAT TACAACTCCC ACGAGGACAC ATTTAGCGTT CCCAAGTTGC AAAAACCATG
  CTACATACAG ATACTCGTTA GAAATCTCCC CACTATTTTA AACGAAAAGG CCATTTTCTT
  AAAAGGAGAT AGGAATAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355978214	MGP_WTSI_2_144095548	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259511012					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355978214	MGP_WTSI_2_144095548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144111732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			304 bp proximal
Mgme1	mitochondrial genome maintenance exonuclease 1			1092 bp upstream
Rr397362	regulatory region 397362			939 bp upstream
Rr397363	regulatory region 397363			1604 bp upstream
Rr566423	regulatory region 566423			1621 bp distal
Rr566424	regulatory region 566424			300 bp distal
Rr566425	regulatory region 566425			2 bp proximal
Rr566426	regulatory region 566426			750 bp proximal
Rr566427	regulatory region 566427			1140 bp proximal
Snx5	sorting nexin 5			Intron
				Noncoding-Transcript-Variant
Tssr20524	transcription start site region 20524			762 bp upstream
Tssr20525	transcription start site region 20525			810 bp upstream
Tssr20526	transcription start site region 20526			1066 bp upstream
Tssr20527	transcription start site region 20527			1199 bp upstream
Tssr20528	transcription start site region 20528			1816 bp upstream
Tssr26594	transcription start site region 26594			254 bp downstream
Tssr26595	transcription start site region 26595			628 bp downstream
Tssr26596	transcription start site region 26596			692 bp downstream
Tssr26597	transcription start site region 26597			968 bp downstream
Tssr26598	transcription start site region 26598			1024 bp downstream
Tssr26599	transcription start site region 26599			1040 bp downstream