rs259511555 SNP Detail

Summary

• ID
  rs259511555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36917253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAACTATA AATGAACTGA
  GTTTATGCCC ATCAGGTGAA TTTACCGTAA CATGAAGCTC AGAGAAACAT TTTCAGACAT
  AGTTGGATTT TGGAATTAGA ATCAGGGTTT GGGGACTTGA ACTCAGGTTT CTTTTCGGGG
  AGAGAGACTC TCCAAAGTAT GTAATCATCA CTATTTGTAT TTCTGGAAGG ACCTGTGGGT
  Y
  TTTAGGCCTG ATTCCTTTTT ATAGAAGAGT TTTCTCTATT AATTGGTGTG GGTGGGTGTT
  GGTGCGCTAC ACAGCATTTC TGGTCTTTGC TTTGCCTGTA TAGTCTGGGG ATTGAGCTTA
  GGTGGTCCTG ATAAGTGGCC AGCAGCTGTG CTCACAAGCG TCTCCCCAGC ACTAAGTCAG
  TGGTTGTTTT ACCTGTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400282727	MGP_WTSI_18_36943854	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259511555					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400282727	MGP_WTSI_18_36943854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36917253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9877	CpG island 9877	635 bp distal
Hars1	histidyl-tRNA synthetase 1	995 bp upstream
Hars2	histidyl-tRNA synthetase 2	within coordinates
Rr345482	regulatory region 345482	948 bp proximal
Rr352752	regulatory region 352752	within coordinates
Rr353949	regulatory region 353949	948 bp proximal
Rr405605	regulatory region 405605	876 bp downstream
Tssr150671	transcription start site region 150671	965 bp downstream
Tssr150672	transcription start site region 150672	929 bp downstream
Tssr152977	transcription start site region 152977	1092 bp upstream
Tssr152978	transcription start site region 152978	1059 bp upstream
Tssr152979	transcription start site region 152979	1009 bp upstream