rs259516300 SNP Detail

Summary

• ID
  rs259516300
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30224912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCCTCT GACTTTTTCA
  CCTCCCCTCC TCCCTGCTGC TCCCCGGGAG ATTTGCATCA TCACTTCCTA AATTATATCT
  CAGTCCCCAT TTGCTTTTAG GAAGCTGTTC ACACGTCATA CGTTTGAACA GATCCAGGGT
  CCAGAATTTG GGCTTGGGGT GTAAAGTTAA AAGGCATTGT TGAGGGTCTT ACTTTTTAAT
  S
  TAAAACATGT TTCAGGGAGT CTGTAAAATT ACTCTGTCCA AAAAAACCCC TCCTCCACCA
  CCACCACCAC CACTACCACC ACCACCACCA CTATCACCAT CATCACCACC ATCATCATAA
  CCACCAGCAA CAACAAACAA CAACAAGGAA TCCCCCAAAC AGATAAACAC CCCTACCCAA
  CTAAACCGAA CCGAAAACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397979246	MGP_WTSI_17_30142883	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259516300					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397979246	MGP_WTSI_17_30142883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30224912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	155 bp distal
Gm50019	predicted gene, 50019	1146 bp upstream
Rr525144	regulatory region 525144	1703 bp distal
Rr525145	regulatory region 525145	1195 bp distal
Rr525146	regulatory region 525146	864 bp distal
Rr525147	regulatory region 525147	within coordinates
Rr525148	regulatory region 525148	1810 bp proximal
Tssr143600	transcription start site region 143600	1545 bp downstream
Tssr143601	transcription start site region 143601	1419 bp downstream
Tssr143602	transcription start site region 143602	1092 bp downstream
Tssr143603	transcription start site region 143603	1062 bp downstream
Tssr143604	transcription start site region 143604	840 bp downstream
Tssr143605	transcription start site region 143605	145 bp downstream
Tssr143606	transcription start site region 143606	33 bp downstream
Tssr143607	transcription start site region 143607	1717 bp upstream
Tssr147242	transcription start site region 147242	1298 bp upstream
Tssr147243	transcription start site region 147243	298 bp upstream
Zfand3	zinc finger, AN1-type domain 3	within coordinates