rs259523298 SNP Detail

Summary

• ID
  rs259523298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95799751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCTCT CAATGCTCCC
  CAAAATCCAC CTTCCTTCTT GCAGGCCTTA AGTTACCATT GCTGTGCAGG GTTGCTCTCC
  ACTCTGAGGG AAACATGATC TTTTTTATCA TGTTTATCAG CCCCCGCCGG CTGTGCATCC
  CCTCCCCTCC CCATCCCCTC CCCTGCCAGC TGTGCATCCT TCCTATAACA ACTGTACTCC
  Y
  TATATCCATT GTTCTTGCAT TTGTCTATTT TCCCTGGGCT CCTTCCCTTT CTCCAGCCCC
  TGCTCTTCTC CACTCCCTCA CAGGTAGCCC TGGCTATGTC CTTGCACCAC ATGGTGGATC
  ACAATCATCT GTAGCCGCAG TCCCGAGGGT TCTGATGTGC TCATCTGGCC TCCAAGAGCA
  CCGAGCACAT ACATGTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358909652	MGP_WTSI_3_95696362	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259523298					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358909652	MGP_WTSI_3_95696362	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95799751 () rs orientation: forward

Symbol	Name	Function Class
Aph1a	aph1 homolog A, gamma secretase subunit	1530 bp upstream
BC028528	cDNA sequence BC028528	434 bp upstream
Cpgi13526	CpG island 13526	1262 bp proximal
Cpgi13527	CpG island 13527	1830 bp proximal
Rr78078	regulatory region 78078	within coordinates
Rr78079	regulatory region 78079	649 bp proximal
Rr397845	regulatory region 397845	1277 bp upstream
Tssr30653	transcription start site region 30653	1481 bp upstream
Tssr30654	transcription start site region 30654	1514 bp upstream
Tssr30655	transcription start site region 30655	1574 bp upstream
Tssr34557	transcription start site region 34557	503 bp upstream
Tssr34558	transcription start site region 34558	454 bp upstream
Tssr34559	transcription start site region 34559	389 bp downstream
Tssr34560	transcription start site region 34560	427 bp downstream