rs259524616 SNP Detail

Summary

• ID
  rs259524616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163443998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTGGCC AAAGCGGCTC
  AGCTGATGGC ATACTGACAC AGGCAGCCAG TCCAGACATC AGCTGAGGAC AGAGTAGTTC
  TGCAAATGAT AAGCCTGAGG TCTAGGTCTG AAGCTGGTTT CTGCATTGAT TTGCCGCTTC
  TCTAGAGGTC ACAGCAGGCA GGGGGATTGA AAAAAAAAAA TATATATATA TATATAAAAT
  R
  AAAATAAATA AATAAAAAGA CAATTTAATG AGAAAATGAT GTAGAACACT AGGCATATGG
  CAGTGTGTTC CAGCTTCCCT CCCCGAGGCC TCAGTTTCCC CACCCGAAAC CCAACTCAGC
  TGCACAGCCG GGGCCACCAG GTGGTGTCAA GCCCCAAGTC AGCACTACAA AGTTCACTCA
  TGCGCATTCC CGGATGGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss356411364	MGP_WTSI_2_163427814	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs259524616					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356411364	MGP_WTSI_2_163427814	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163443998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	within coordinates
Rr397464	regulatory region 397464	461 bp upstream
Rr569433	regulatory region 569433	645 bp distal
Rr569434	regulatory region 569434	within coordinates
Rr569435	regulatory region 569435	45 bp distal
Rr569436	regulatory region 569436	130 bp proximal
Rr569437	regulatory region 569437	255 bp proximal
Tssr21475	transcription start site region 21475	216 bp upstream
Tssr21476	transcription start site region 21476	253 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	236 bp upstream