rs259530443 SNP Detail

Summary

• ID
  rs259530443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141388952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTAAAAG GTTCCTTGTG
  TGTTGGTGCA GGGAGACACG CACACAGGCA TGCAGCGCTG GTGTACAGGC GGTAGTTAGC
  CACTCAGCTT AGGAGCTAGG ACCCTGACTT AGATTCTCTG GAAAAGAGGC CAGTGCTCTT
  AGCCACTGAC CTGGCTATCT GTCCAGCAGC ATTTTTTTTT GTTTTGTTTT GTTTTGAATT
  Y
  ACTTTTTCCA TCGTGAGTTC TGGAGATTGA ACCCAAGTCA TCCAGTTTGC ACACCAACTC
  TGGCTTGCAA GCCAGTTTCC CTGCTTTGGC CATCTTACCA GGTCTGCCAT GGCTGCTTCA
  GCCTCGGTGT CTATGGTGGG AGCTGAACTT TTTTTTTTTT TTAAATCTGT TTATTTATTT
  TATGAATATG AGTACCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388825	CHEV_4_141217556	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259530443					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141388952 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15240	CpG island 15240			1543 bp proximal
Gm70264	predicted gene, 70264			603 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2			Intron
				Noncoding-Transcript-Variant
Rr603849	regulatory region 603849			1687 bp distal
Rr603850	regulatory region 603850			1964 bp proximal