rs259531194 SNP Detail

Summary

• ID
  rs259531194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47450806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATGTGT ACCATGTTGC
  ACAGAGGGTA AGCCTTTAAA GAGATCAAAC AGTAGCCTGA CCTGCCTTTC CATACTTCCA
  ACAGCAGGTC TTGGTCCTGT TGGCTGCTAC TTTGCTGCCA GTGTATCTTA CATTGTAACC
  TTGGGCTTAG CTGCTCAAAG TTAAATTGGA TGTTTCATGT AAAACCCAGA CCTGGAAAGT
  Y
  GCCTGCTAGG GTCTCAGGGC AGAGTCTGCC ATCATTGAAA GCAGTACCAG CCTCAACTGA
  AGGCTGAAAA AAATATATAA AACAATCCTT AAGACAGCCT GCAGTGCCCC TCAAAGTTGT
  CAAGATGGTT GGCAGCATAC ATAACCCAGA GATGTACAAA TGGATACCTG TCCTTAGAGC
  AGAGTGGCCA CCTGCTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325826247	CHEV_19_47536857	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259531194					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47450806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11031	CpG island 11031	1032 bp proximal
Rr549061	regulatory region 549061	1423 bp distal
Rr549062	regulatory region 549062	1513 bp distal
Rr549063	regulatory region 549063	434 bp distal
Rr549064	regulatory region 549064	316 bp distal
Rr549065	regulatory region 549065	800 bp proximal
Rr549066	regulatory region 549066	1785 bp proximal
Rr549067	regulatory region 549067	1870 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	1744 bp upstream
Tssr159730	transcription start site region 159730	1600 bp upstream
Tssr159731	transcription start site region 159731	1727 bp downstream
Tssr159732	transcription start site region 159732	1748 bp downstream