rs259531282 SNP Detail

Summary

• ID
  rs259531282
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36005937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAGTAGC ATTATTAGGA
  GGTAGGTGTG GCTTTGTAGG AGTAAATATG TCACTGGGAG GGTGGGCTTT GAGGTCCTAT
  GCTTAGGTTC TGCCTAGTGC AATAGGGAGC TTCTTCCTAG CTGCCTGTGG AAGAAAGTCT
  CTCCTGGTTG CCTTTATCAT TCTTACAATG TTTTGGTGGG GAAATGGGGC TGCTTTTTGC
  M
  GTCTTCTGTG GAGTCTGCTT GAGGCTAAGA TGAAGAAATT CAGATTGGTT GCATTGAGGA
  AGATATCTCA AAAAAAAAAA AAAAGTCTAA CCTAGACTCT ACCCTGTGGT TTACTACTAT
  GAAGAGTGTT TTGATTGATC AAGCACAGCA AGCTTAGAAA GAAAAATTAC AAAATTATGG
  TTCAAATAAT AAAGGGGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084821	CHEV_4_35952970	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259531282					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36005937 () rs orientation: forward

Symbol	Name	Function Class
Gm12369	predicted gene 12369	1791 bp upstream
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	67 bp downstream