rs259531877 SNP Detail

Summary

• ID
  rs259531877
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60058674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTCTCTG ATGCTGCCTC
  TGAAAAACTT TTTAAAGGAA TAACATGCTT TGCATCTGCA AAAAGTAAGT GGATGGAGGA
  AAGGCTGTGT GCTACTCGGA TGAGATCTCA GAGGTATGAA ATCAAGAAGT CTCACAGAAT
  GAGACAGTTT AGGAAGATGC CAAGTTCTCT CAAGAGCATG TGCCCAAAGT CCGGGATGTG
  K
  GGGGTAAGAG ATGATTGAAA GTTTACCTAG ACAGTGAAAG AAATGCCTGC CAGTGCTAGG
  AGCCGTGGAC CTGAAACTGA AGTATGGTTT CCTCAGAAGG ATTCATGAAG TTTAATCATA
  TGTTTTAAAA AAATGTAGAA GGATTTAGAG AAATAGTAGA AAACGATGAA ATTGAGGAAA
  AAACAAGTAG ACTTAGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324985299	CHEV_15_60018380	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259531877					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60058674 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	543 bp proximal
Tssr4605	transcription start site region 4605	379 bp downstream
Tssr134460	transcription start site region 134460	61 bp downstream
Tssr134461	transcription start site region 134461	202 bp downstream
Tssr134462	transcription start site region 134462	289 bp downstream
Tssr134463	transcription start site region 134463	349 bp downstream
Tssr134464	transcription start site region 134464	443 bp downstream
Tssr134465	transcription start site region 134465	497 bp downstream
Tssr134466	transcription start site region 134466	510 bp downstream
Tssr134467	transcription start site region 134467	546 bp downstream
Tssr134468	transcription start site region 134468	573 bp downstream
Tssr134469	transcription start site region 134469	604 bp downstream