rs259532810 SNP Detail

Summary

• ID
  rs259532810
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83197079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAATGTA CTTTCTTCCT
  GTAGCACAGC TTGATAGTGA GTTCAGATGA GGTACCTTAT TACAAAGGAA CTTTGCCTGA
  TAAGCCAATT GTCTGTCTCT CTCTCTCTGT CTCCCCCCCC CCACGTCTCT CTCTGTGTTT
  GTGTGTCTTT CCTCTTCCCA TCCCCCTTTC TTCCCCTGCC CTCTCCCATT CCCCACCCCC
  M
  TTCTCCCCCT CTCTCTTCCC CTCTCCCCCT CCATGGGCAT AAAATCCAGA GCCTTCTGAA
  TGGCAGATAA ACCTTCTACA ACCGGTCTTA GCCCCTAATA CACCTTGTGA TAATGAATTT
  GCAGACATTT CAATTTCCTT GTTGATACTA AAATTCGTCC CTGTCATCAG CCAGCTGAGG
  ATTTTATAGC ATCATCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss378276718	MGP_WTSI_9_83208633	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs259532810					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378276718	MGP_WTSI_9_83208633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83197079 () rs orientation: forward

Symbol	Name	Function Class
D9Mit265	DNA segment, Chr 9, Massachusetts Institute of Technology 265	430 bp proximal
Gm46122	predicted gene, 46122	1682 bp upstream
Rr683867	regulatory region 683867	1306 bp proximal
Rr683868	regulatory region 683868	1732 bp proximal