rs259537319 SNP Detail

Summary

• ID
  rs259537319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGCGGGA CTCACAACCT
  CTGCAGCCCC GAGCGCTGGA CCCCGGTGCG CCGCTGGCCC CGGGGCGCGC GAGTGCTTCC
  GGCGGGGGCG TGGCCGAGAC GGGGGCGGGG TGGGGACGAG GGGCGGAGTC AGTGGGGGCG
  GGGCGGGGTA GAGTGGACGG AGCGGGGCTG GGGTGGGGGC GGTGTCGGAG ATGGGAGCGC
  Y
  TAGGGACCCG AACCGAGTGC ACCTGCTGCA GCCTGGCACT AGGGATTTGA AAATCCATGG
  AGATGGAAAC CTATGCCGAG GTTAGAAGAC CTGGATCCAC TTTGCAGGAT TTTAAATATC
  CTTCAAGCCT CAGTGCCTGG CAGACTGGAC TTTGGACTTC GGACTTCCAG CTCCGATGCT
  GAAAAAGGAG GGTTTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505055	CHEV_8_13200744	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259537319					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250744 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	38 bp upstream
Cpgi20110	CpG island 20110	within coordinates
Gm56825	predicted gene, 56825	within coordinates
Grtp1	GH regulated TBC protein 1	49 bp upstream
Rr659872	regulatory region 659872	1176 bp distal
Rr659873	regulatory region 659873	within coordinates
Rr659874	regulatory region 659874	221 bp proximal
Rr659875	regulatory region 659875	740 bp proximal
Rr659876	regulatory region 659876	1128 bp proximal
Rr659877	regulatory region 659877	1479 bp proximal
Tssr76386	transcription start site region 76386	32 bp upstream
Tssr76387	transcription start site region 76387	202 bp upstream
Tssr80428	transcription start site region 80428	108 bp upstream
Tssr80429	transcription start site region 80429	669 bp downstream