rs259543550 SNP Detail

Summary

• ID
  rs259543550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98851260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGATCCCCC ACCCGTCCCC
  GGCGGTCCCC GTGGTCCCCT GCAGTCCCTG GCTCTGCCAG CGCTAGCTCA TCGGCGCTGC
  CTTTGTTCTT CCCGGTCTGG GCGTTTCCGT GTCCCGCACT GCGGCGGCGG GACTCAAAGA
  CTAAGATAAA CTTAAAGCAT GGAGACCACC CTTTCCCCGC AGAGGTGACC AAAGCCTTAG
  R
  CGTTTCCTTG CAGATCTGGG GCGACTGACA CCCACCCTCT ATCTACCGAG AGCCGGGGAA
  GGCTTGCTCA CCATGGTTGC TGCTTCGCGG CTGCCGGGTG GATGGCGGAG GCGAGGAGGA
  GGTGTTGCTT CTTACAGCGC GACTCTTAGG CGGTCGATGT AAGAGAACCT GCGGCACTTG
  GGCGGATGCG GCTCCTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395146340	MGP_WTSI_15_98783810	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259543550					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395146340	MGP_WTSI_15_98783810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98851260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7685	CpG island 7685	within coordinates
Gm49450	predicted gene, 49450	within coordinates
Gm56698	predicted gene, 56698	1186 bp downstream
Rr370012	regulatory region 370012	52 bp downstream
Rr404613	regulatory region 404613	91 bp upstream
Rr509236	regulatory region 509236	112 bp distal
Rr509237	regulatory region 509237	within coordinates
Rr509238	regulatory region 509238	162 bp proximal
Rr509239	regulatory region 509239	314 bp proximal
Rr509240	regulatory region 509240	1815 bp proximal
Tssr132970	transcription start site region 132970	305 bp downstream
Tssr132971	transcription start site region 132971	365 bp upstream
Tssr136334	transcription start site region 136334	96 bp downstream
Tssr136335	transcription start site region 136335	149 bp downstream
Tssr136336	transcription start site region 136336	162 bp downstream
Tssr136337	transcription start site region 136337	208 bp downstream
Tssr136338	transcription start site region 136338	218 bp downstream
Tssr136339	transcription start site region 136339	258 bp downstream
Tssr136340	transcription start site region 136340	283 bp downstream
Tssr136341	transcription start site region 136341	309 bp downstream
Tuba1a	tubulin, alpha 1A	within coordinates