rs259544497 SNP Detail

Summary

• ID
  rs259544497
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAGAAAG GGCATAAACT
  GCTTTATCCA GTGTTATATT AAAAGCTTAA TGTATATAAT CTTTTAGAGG TAAAATCTAC
  AGCCAGCAAA AGTCATGGTA AATATTCTTT GACTGAACTC TCACTAAACT CCTCTAAATT
  ATATGTCATA TTAACTGGTT AAATTAATAT AAATTTGTGA CATGACCTTA ACTGGTTAGG
  W
  AGGATATTTT TCTTCATGCA AAAATATGAC TAATAATAAT TTAGCACAAA AATATTTCCC
  AATACTTTAA TTCTGTGATA GAAAAATGTT TAACTCAGCT ACTATAATCC CATAATTTTG
  AAAACTATTT ATTAGCTTTT GTGTTTGACC CTTCCCTAGC CAAAGGCAAC TATTTAAGGA
  CCCTTTAAAA CTCTTGAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815791	CHEV_6_70675362	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259544497					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702352 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1078 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1067 bp upstream
Igkj4	immunoglobulin kappa joining 4	1783 bp downstream
Igkj5	immunoglobulin kappa joining 5	1445 bp downstream
Rr158	regulatory region 158	583 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	within coordinates
Rr399685	regulatory region 399685	179 bp upstream
Rr399686	regulatory region 399686	1143 bp upstream
Tssr1880	transcription start site region 1880	1482 bp upstream
Tssr56953	transcription start site region 56953	1821 bp downstream
Tssr56954	transcription start site region 56954	1689 bp downstream
Tssr56955	transcription start site region 56955	1468 bp downstream
Tssr56956	transcription start site region 56956	440 bp upstream
Tssr56957	transcription start site region 56957	1062 bp upstream
Tssr56958	transcription start site region 56958	1109 bp upstream
Tssr56959	transcription start site region 56959	1127 bp upstream
Tssr56960	transcription start site region 56960	1150 bp upstream
Tssr56961	transcription start site region 56961	1164 bp upstream
Tssr56962	transcription start site region 56962	1172 bp upstream
Tssr56963	transcription start site region 56963	1221 bp upstream
Tssr56964	transcription start site region 56964	1236 bp upstream
Tssr56965	transcription start site region 56965	1242 bp upstream
Tssr56966	transcription start site region 56966	1253 bp upstream
Tssr56967	transcription start site region 56967	1268 bp upstream
Tssr56968	transcription start site region 56968	1292 bp upstream
Tssr56969	transcription start site region 56969	1328 bp upstream
Tssr56970	transcription start site region 56970	1341 bp upstream
Tssr56971	transcription start site region 56971	1361 bp upstream
Tssr56972	transcription start site region 56972	1387 bp upstream
Tssr56973	transcription start site region 56973	1425 bp upstream
Tssr56974	transcription start site region 56974	1457 bp upstream
Tssr56975	transcription start site region 56975	1490 bp upstream
Tssr61321	transcription start site region 61321	1114 bp downstream
Tssr61322	transcription start site region 61322	1279 bp downstream
Tssr61323	transcription start site region 61323	1294 bp downstream
Tssr61324	transcription start site region 61324	1384 bp downstream
Tssr61325	transcription start site region 61325	1450 bp downstream
Tssr61326	transcription start site region 61326	1485 bp downstream
Tssr61327	transcription start site region 61327	1499 bp downstream
Tssr61328	transcription start site region 61328	1590 bp downstream