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rs259551897 SNP Detail
Summary
  • ID
    rs259551897
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:122827297 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACAGCCACC CGAAAGGTTT
TGTTCCGAGA CTTGGTGAAG TTGGTTTTTC GCATTCTGAA GACGATGAGG CTGTAACAAA
TTACCATGAT GAAAAACGGC ACCAGGAAGC CCACCACCAG CCTTGTGATG GTTATTGCCA
TCAGCGGTGT CGGCACATGA TTGTCATACG TGAATTGGTC AACATAATCC CCCTGGAAAT
Y
ATAGGGGTAT AAATGACCAC TAGAAGCAGT AGGGAAAAGT TCTGTGTGAG CAGAGAGAAA
AGCGTCAGCG TTCAGTGTAT TGGATTTACG ATCTTCAACA GGAAACCCGC TGGGTACGGC
GGCTGTGAGG ACATTAGGAG GCTTTCCACC ATAATGGGGT TGTTGGTTTG CTGAATCTAG
AGAGAATGAG TCTTCAGGAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369914785 MGP_WTSI_6_122800356 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259551897 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369914785 MGP_WTSI_6_122800356 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:122827297 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
C3ar1 complement component 3a receptor 1 within coordinates
Tssr58711 transcription start site region 58711 119 bp upstream
Tssr58712 transcription start site region 58712 237 bp upstream
Tssr58713 transcription start site region 58713 293 bp upstream
Tssr62972 transcription start site region 62972 1959 bp upstream
Tssr62973 transcription start site region 62973 1898 bp upstream
Tssr62974 transcription start site region 62974 1812 bp upstream
Tssr62975 transcription start site region 62975 1727 bp upstream
Tssr62976 transcription start site region 62976 1638 bp upstream
Tssr62977 transcription start site region 62977 1580 bp upstream
Tssr62978 transcription start site region 62978 1526 bp upstream
Tssr62979 transcription start site region 62979 1493 bp upstream
Tssr62980 transcription start site region 62980 1477 bp upstream
Tssr62981 transcription start site region 62981 1458 bp upstream
Tssr62982 transcription start site region 62982 1299 bp upstream
Tssr62983 transcription start site region 62983 841 bp upstream
Tssr62984 transcription start site region 62984 745 bp upstream
Tssr62985 transcription start site region 62985 706 bp upstream
Tssr62986 transcription start site region 62986 411 bp upstream
Tssr62987 transcription start site region 62987 285 bp upstream
Tssr62988 transcription start site region 62988 219 bp upstream
Tssr62989 transcription start site region 62989 59 bp upstream
Tssr62990 transcription start site region 62990 6 bp upstream
Tssr62991 transcription start site region 62991 2 bp downstream
Tssr62992 transcription start site region 62992 27 bp downstream
Tssr62993 transcription start site region 62993 121 bp downstream
Tssr62994 transcription start site region 62994 227 bp downstream
Tssr62995 transcription start site region 62995 344 bp downstream
Tssr62996 transcription start site region 62996 404 bp downstream
Tssr62997 transcription start site region 62997 546 bp downstream
Tssr62998 transcription start site region 62998 601 bp downstream
Tssr62999 transcription start site region 62999 672 bp downstream
Tssr63000 transcription start site region 63000 729 bp downstream
Tssr63001 transcription start site region 63001 752 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory