rs259556688 SNP Detail

Summary

• ID
  rs259556688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCTCCTG GGTGTCTGGG GGATCTTGCT
  ACTTCTGGGG CTGTGGGGAC TGCTCCAGGG CTGCACCCGG AGCCCCTCCC TGGCTCCTCG
  GTGGCCCCCT GGGCCTCGCC CTCTGCCGTT CCTGGGGAAC CTGCATTTGC TGGGTGTGAC
  Y
  CAACAAGACC GGGCACTGAT GGAGGTAGGG TGGGCGACCC TATTTCATCT CACAGCTCAC
  ATGGTGTCTG TGTCCCAGCA CTGACAAGGG AAGCCAGGGG GGATTCAGGA TGCCAGAGGC
  TTGTCCCAGA GAGCAGATGT TGGAAGCAAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704310	CHEV_5_139828759	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259556688					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338560 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	within coordinates
Tssr49499	transcription start site region 49499	182 bp downstream
Tssr49500	transcription start site region 49500	1404 bp upstream
Tssr49501	transcription start site region 49501	1436 bp upstream