rs259558098 SNP Detail

Summary

• ID
  rs259558098
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45320731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGGCCCG TGCTCGGCAG
  CCCGCCACCG ACTCCGGTCC CGCGGACAGT ACTTCAGCCA TGGCAGGCGT CACCATCGCA
  GCTTCCGGTA TCTACTTCCG CTTCCGCTAC CCGCCCACCA GGGTCATCTC TTTCCGGTGG
  TTGTGGGCTT TCTGAGTTGG ACTTGAGCTT GGGAGATACT CGCTTCATCC CATGGGTGCT
  M
  CTCCCTGCCC TGTGTCTGTA GCTTCACGGT ACCTAATGTA ACAATCTCCC ACCTCCTCCC
  ACACACATCA CACCTTTTCA CCTACTTGAG TTCATCTCTT CAGTGGCTTG GGAACATCGG
  TAACTCAGGA ATTCTCCCAG CTACTTCTTT GGGAGCACAC TAACAGCTAT GTGAGAAACT
  GTTAAATCCA AAACCCACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361364494	MGP_WTSI_4_45333603	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259558098					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361364494	MGP_WTSI_4_45333603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45320731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	within coordinates
Exosc3	exosome component 3	115 bp upstream
Gm68922	predicted gene, 68922	within coordinates
Rr591346	regulatory region 591346	362 bp distal
Rr591347	regulatory region 591347	within coordinates
Tssr37060	transcription start site region 37060	348 bp downstream
Tssr37061	transcription start site region 37061	334 bp downstream
Tssr37062	transcription start site region 37062	302 bp downstream
Tssr41531	transcription start site region 41531	448 bp upstream
Tssr41532	transcription start site region 41532	293 bp upstream
Tssr41533	transcription start site region 41533	258 bp upstream
Tssr41534	transcription start site region 41534	97 bp upstream