rs259560062 SNP Detail

Summary

• ID
  rs259560062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGATTACA GAATAGGTAT CCGTGCTGTG
  GTACTGTATA GAAAGTCAAG TTAGGACAAT CAAACTCAGG CTGGTCAGTG ACTGACTAAA
  CGAGTGTTCT CAGATTCCAG AAGCCTGTTC TCATCGCACA GGCAGTTTGT GGACCCCTTA
  Y
  TTCTTCTTTG GCCCTTAGGC AAATTCCTCC CAATGGGAAG AGAATAAATT GGAGGGGCTA
  GGGGAAATTT GGGAGGGCAG AACTAGTGTT TGGTATTTAA TGGGAAGAGG TTTGTGAGTC
  CCAAAAATAA CAGGGTCCTT AAGTGAGGTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353669	CHEV_7_109399862	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259560062					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	364 bp distal
Rhog	ras homolog family member G	1230 bp upstream
Rr652562	regulatory region 652562	1271 bp distal
Rr652563	regulatory region 652563	735 bp distal
Rr652564	regulatory region 652564	406 bp distal
Tssr2354	transcription start site region 2354	1072 bp downstream
Tssr68328	transcription start site region 68328	1655 bp downstream
Tssr68329	transcription start site region 68329	1634 bp downstream
Tssr68330	transcription start site region 68330	1093 bp downstream
Tssr73939	transcription start site region 73939	1974 bp upstream
Tssr73940	transcription start site region 73940	1927 bp upstream
Tssr73941	transcription start site region 73941	1874 bp upstream
Tssr73942	transcription start site region 73942	1789 bp upstream
Tssr73943	transcription start site region 73943	1262 bp upstream
Tssr73944	transcription start site region 73944	1225 bp upstream
Tssr73945	transcription start site region 73945	1210 bp upstream
Tssr73946	transcription start site region 73946	1014 bp upstream
Tssr73947	transcription start site region 73947	869 bp upstream
Tssr73948	transcription start site region 73948	833 bp upstream
Tssr73949	transcription start site region 73949	800 bp upstream
Tssr73950	transcription start site region 73950	753 bp upstream