rs259569287 SNP Detail

Summary

• ID
  rs259569287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141933756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG CATTTGAAGG TTACCCTTGC
  Y
  AGACATGCAA GTAAGTCAGC CCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471178	CHEV_7_149565924	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259569287					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141933756 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	1156 bp upstream
Rr658151	regulatory region 658151	1236 bp proximal
Tssr70137	transcription start site region 70137	764 bp upstream
Tssr70138	transcription start site region 70138	812 bp upstream
Tssr70139	transcription start site region 70139	831 bp upstream
Tssr70140	transcription start site region 70140	861 bp upstream
Tssr70141	transcription start site region 70141	874 bp upstream
Tssr70142	transcription start site region 70142	910 bp upstream
Tssr75774	transcription start site region 75774	771 bp downstream
Tssr75775	transcription start site region 75775	792 bp downstream
Tssr75776	transcription start site region 75776	798 bp downstream
Tssr75777	transcription start site region 75777	831 bp downstream
Tssr75778	transcription start site region 75778	871 bp downstream
Tssr75779	transcription start site region 75779	907 bp downstream
Tssr75780	transcription start site region 75780	917 bp downstream
Tssr75781	transcription start site region 75781	939 bp downstream
Tssr75782	transcription start site region 75782	963 bp downstream