rs259571870 SNP Detail

Summary

• ID
  rs259571870
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97145660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCCGA TCTCGGAGCC
  TGGCTTTAGG GGCTGGGGCG AGGGGCCTGG CGGGCGCTGT GCACCGGGTG CTTGCTGGGG
  TCCCCGCCCG GGTTTGGAGG AGGAGGAGGA GGACAGGAGC GAGGGCCGCG GCGCGTTCCC
  TCGGGCACCA CCGGGGCTTT GCGGGGGGAG GGGGTGCGGA GGCGCCGCGG GGACGCCCCC
  M
  GGTTCCCTGG GAAAGTTCGA GCCCTTTTCC TAACTCGGAG ACGGCGGCCC GAGGCACCGG
  GCCCAGCTCT AGAAGCAAAG GGGCAGGAAA GAAGGCTTCC GGTTGGAATG CACAGATAAG
  GGCATTAGCC TTTAAAAAAA ATAAACAAAA AAAACAAAAA CAAAAAAAAT CCAGAGTCGC
  GCTGGCGGCT TCAGGACTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325076405	CHEV_15_97078210	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259571870					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97145660 () rs orientation: forward

Symbol	Name	Function Class
Amigo2	adhesion molecule with Ig like domain 2	492 bp upstream
Cpgi7616	CpG island 7616	within coordinates
Gm57814	predicted gene, 57814	within coordinates
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	1341 bp proximal
Rr308785	regulatory region 308785	1741 bp proximal
Rr312356	regulatory region 312356	within coordinates
Tssr132852	transcription start site region 132852	775 bp downstream
Tssr132853	transcription start site region 132853	727 bp downstream
Tssr132854	transcription start site region 132854	331 bp downstream
Tssr136109	transcription start site region 136109	522 bp upstream
Tssr136110	transcription start site region 136110	464 bp upstream