rs259578823 SNP Detail

Summary

• ID
  rs259578823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124717409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGCCC GTGGGCGGCG
  CTTCACGGAG GCGTAGGGAA GCAATGGCCG CTGACGGTGA GGGTGGCATG GATCGAAACG
  CGGAGCCGGG CGGGAGGGAT ACTTTTGGTC TTTAGAGGCA CAGCCAGTGT ATTCATTCAT
  TCGTTTATTC ATTCACTCAG CAATTTGGTT TTTGAGGGCG GTTCTCACGG AGAACTCGCT
  R
  TGATGCCTTG AGCCCTTCAT CCTCCAGTCT TCTTTAGATT GCTGGAATTA CGGACGTGCA
  CGATCAAGCT GGATTTTTCT GTGGTGCTCA GATATTTGTT CATGCTCAGT AGGCATTCTA
  CCAATTGAGC TTCCTCCCCA GCCCTAATTT TTAGGCAGAT GCTCTCTCCT TCCTTAGCCT
  TATCCGAGTT CTGGGATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366563105	MGP_WTSI_5_125029355	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259578823					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366563105	MGP_WTSI_5_125029355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124717409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	within coordinates
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	215 bp upstream
Gtf2h3	general transcription factor IIH, polypeptide 3	within coordinates
Rr399368	regulatory region 399368	69 bp downstream
Rr620506	regulatory region 620506	226 bp distal
Rr620507	regulatory region 620507	196 bp distal
Rr620508	regulatory region 620508	within coordinates
Tssr48907	transcription start site region 48907	222 bp downstream
Tssr48908	transcription start site region 48908	162 bp downstream
Tssr53375	transcription start site region 53375	302 bp upstream
Tssr53376	transcription start site region 53376	271 bp upstream
Tssr53377	transcription start site region 53377	251 bp upstream