rs259582740 SNP Detail

Summary

• ID
  rs259582740
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66055643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGTTT TTTTCCTGTT
  CTGAGTGCCA TTGAATTCTG CTCTTACCAT TATGTTTTTC TCCTGTCTGC TGGGTTTTGC
  ACTTTGTAGA CAGCCCTAGA CCTTCAGAGG CCTTCTCTGA GATTTGCTAC TCCATGGGAA
  GTTTCTCCTT GTGGAACTTT TCTTCTGGCA TAGCTTCTGA GCAGCCTCCC TGCATCTCAC
  M
  TTCCTCCCCA CCCCCCACCC CACCCCCCTT TGTTCTTTTT GACACTAGGG ACAGTCCAGG
  GCCCTGTACA TGCTAGGTGG GCACTCTATC CTGAGCTGCA GCTGGGCTTC TGGAAGTTCA
  TTGCTCCAAG TAACACCTTC ACGTGCTGTG CTCTGACCTT GCTGGGCCTT TCTGGACCAT
  CATTTATTAA CTTTTTTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658625	CHEV_18_66082226	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259582740					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66055643 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	204 bp downstream
Gm50119	predicted gene, 50119	1484 bp downstream
Gm58551	predicted gene, 58551	889 bp upstream
Rr393825	regulatory region 393825	1641 bp upstream