rs259582997 SNP Detail

Summary

• ID
  rs259582997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153426093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTTTAA TCCCAGCACT
  TGGGAGGCAG AGACAGGAGG ATTTCTGGGT TCAAGGCCAG CCTGGTCTAC AGAGTGAGTT
  CAGGACAGCC AGGGCTATAC AGAAAAACCA AAACCAAAAA ACAAAACAAA ACAAACAAAC
  AAAAAACAAA AGAAAAAAGA AGCTGGGCAG TGGTGGCGCA CACCTTTAAT CCCAGCACTC
  S
  GGAGGTGGAG GCAGAGGCAG GTGGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAGAGTG
  AGTTCCAGGA CAGCCAGGCT ACACAGAGAA ACCATGTCTA GGGAAAAAAA AAAAAAAAAA
  AAAAAGAAAG AAAGAAAGAA AGAAAAAGAA AAGAAAGACT TTTGAAAGTG AAACAAGTAT
  TTTTCTTTTT TGAGAGTGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351975361	MGP_WTSI_1_155397477	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259582997					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351975361	MGP_WTSI_1_155397477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153426093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	486 bp distal
F630010C12Rik	RIKEN cDNA F630010C12 gene	636 bp upstream
Npl	N-acetylneuraminate pyruvate lyase	633 bp upstream
Rr420697	regulatory region 420697	313 bp distal
Rr420698	regulatory region 420698	115 bp distal
Rr420699	regulatory region 420699	544 bp proximal
Rr420700	regulatory region 420700	630 bp proximal
Tssr14276	transcription start site region 14276	623 bp upstream
Tssr14277	transcription start site region 14277	602 bp upstream
Tssr14278	transcription start site region 14278	519 bp upstream
Tssr14279	transcription start site region 14279	492 bp upstream
Tssr14280	transcription start site region 14280	266 bp upstream