rs259585993 SNP Detail

Summary

• ID
  rs259585993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCCGT GTGTGTTTAA
  TAAGCACAGA ACCCTTCCCC ACCATGAACC CTTCTGGAAA TCCAAACAAC TGAAGCTTTT
  CAGTCCACCA ACAGATTCTG AAGGAGTACT GCATTACCAT TTAAAGATGT TTACCACGTT
  AATTCCCCAT GCCACACCTA CTCTCAGCCC CCTTTCCCAT GCCACGCCTA CTCTCCTCAG
  Y
  CTCCTTCCCC CTCCCCACCA CCCACCATGG CTCTGACAGA CCTAAGTGCT GTTGAAAGGC
  AAGAAGCAGA AGTTGGCAGA ACGAAGGAAA GCTGTCCGCC AGCCCCATTG CCAGGGATGT
  AATGACCCCT ACTTTGAGCC CAAAATCACA CAGCATGTCT TCTACGGGAT GCTGTCTGCC
  ACTGCCCCTT CTGTATAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367131365	MGP_WTSI_5_149365947	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259585993					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367131365	MGP_WTSI_5_149365947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491181 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	510 bp upstream
Cpgi17076	CpG island 17076	1224 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	446 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	1720 bp distal
Rr625195	regulatory region 625195	1092 bp distal
Rr625196	regulatory region 625196	1554 bp distal
Rr625197	regulatory region 625197	520 bp distal
Rr625198	regulatory region 625198	216 bp distal
Rr625199	regulatory region 625199	within coordinates
Tssr49862	transcription start site region 49862	1978 bp downstream
Tssr54574	transcription start site region 54574	1943 bp upstream
Tssr54575	transcription start site region 54575	1854 bp upstream
Tssr54576	transcription start site region 54576	1683 bp upstream
Tssr54577	transcription start site region 54577	1528 bp upstream
Tssr54578	transcription start site region 54578	490 bp upstream
Tssr54579	transcription start site region 54579	346 bp upstream
Ubl3	ubiquitin-like 3	1582 bp upstream