rs259588090 SNP Detail

Summary

• ID
  rs259588090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11312382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATTCTT CTTTGTGTTC
  CTTTTCTCCT CTCTTCAGTT CTCTCTCCTC TTTATGTAAG ATTTTACACA AATTATAACA
  CTGTACAAAT GGTCATTCCA ACCATTTAGA ATTCTTATCA ATCTTTGACT AATTACAATA
  GCCTTAAGTA TAAAAGGCAA ACGTTATATT CTGACATGCT GCAAACATTG TTAAACCTCA
  R
  AAACAAAATC TTAAATGAAG TCAAGGAAGT CAGATGCTGC GTGGTTCTAC TTATGAGGTA
  CCCCTACTAC TCAGTTTTGT AGAAAAGTAA AATGGTGGGG GAGGGGTGGG TGAAGAGCAG
  TTGTTTAGTG GATTGTCATG GGGGTGCCAA GCATGAATGA ATCGAATGCC ACTGAATCAC
  ACACTTCCAG TAGTTAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325721015	CHEV_19_11409508	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259588090					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11312382 () rs orientation: forward

Symbol	Name	Function Class
Ms4a7	membrane-spanning 4-domains, subfamily A, member 7	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544316	regulatory region 544316	1088 bp proximal
Tssr155159	transcription start site region 155159	1778 bp downstream
Tssr158335	transcription start site region 158335	619 bp upstream
Tssr158336	transcription start site region 158336	1034 bp downstream
Tssr158337	transcription start site region 158337	1056 bp downstream
Tssr158338	transcription start site region 158338	1089 bp downstream