rs259593646 SNP Detail

Summary

• ID
  rs259593646
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46655142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTGAAG AGCTTTGTGT
  CCAGTATTCC AGACTCAGAT GAAAATCGAA AATCGATCCT CTCTGTCTAA TTATGCTAAC
  CAGAGAGAAA CGCTTCCAGT TTCGTCAGCA TAGACCATAC ATATATAAAA TAAGGGGCAG
  TGTCTACAAG TAAAACAGTT GCTGGAGTAG GCCGGCCAAG GATTCTACTC GTTTCTAAAT
  W
  ATCAGATGAC TTTTTAAAGT TTCTGTATAT AAGTTACTTG CCCCAGATCT ACAATCTATC
  TGAAGAGATA CATGCATTTG CTCTCCTTTA TCCTTTTCTT TGAGTTGGAG GATATTCGAG
  GTGCTCCATT CTCCCTCTCT TTGTGCGGGT CACTATGCAG CCCTACCCAC CCCCAACCCC
  CTTCAGGGAC CGCCAGACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388503902	MGP_WTSI_13_46597035	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259593646					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388503902	MGP_WTSI_13_46597035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46655142 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	237 bp upstream
Cpgi5539	CpG island 5539	117 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Gm61509	predicted gene, 61509	1229 bp upstream
Rr478915	regulatory region 478915	11 bp proximal
Rr478916	regulatory region 478916	193 bp proximal
Rr478917	regulatory region 478917	294 bp proximal
Rr478918	regulatory region 478918	739 bp proximal
Rr478919	regulatory region 478919	1250 bp proximal
Tssr119597	transcription start site region 119597	193 bp upstream
Tssr119598	transcription start site region 119598	232 bp upstream
Tssr119599	transcription start site region 119599	371 bp upstream
Tssr119600	transcription start site region 119600	383 bp upstream
Tssr119601	transcription start site region 119601	447 bp upstream
Tssr119602	transcription start site region 119602	475 bp upstream
Tssr119603	transcription start site region 119603	1223 bp upstream
Tssr122343	transcription start site region 122343	1121 bp downstream